PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010212.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 516aa    MW: 58035 Da    PI: 8.9592
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010212.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.43.1e-101081554790
                     FAR1  47 k....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                              +    + k+rr+r+++r+gC+ak+  ++  +g+++v++++++HnH+l+
  Itr_sc010212.1_g00001.1 108 EvvdfSAKQRRRRTSNRVGCNAKIGFRRIATGEYVVNDFVENHNHSLC 155
                              1445567999*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-7112155IPR004330FAR1 DNA binding domain
PfamPF105511.1E-12217301IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
TGCGARTGQE GTGASTTRRR PRGGLATISR GRAWLAARSA SLSVRGTLSP AEQEFCGDAS  60
ELNVELEHCT EGIFPGGSKS WVPTCDDAYV RYVGCRSGSM SKFIVEEEVV DFSAKQRRRR  120
TSNRVGCNAK IGFRRIATGE YVVNDFVENH NHSLCSESAK MFLRVNRKLD ISQQTFIVNC  180
GLANIGPSKC LRAYKEVVGG YENVGETRRN YSRFGDIVSF DAMYGTNKWC FLRLWYSLVL  240
VPFTGVDNHK RCITFAVGLL AKEDVDSYSW LLANFKNSMG RPPLCFVTNQ DAAIKVQWSS  300
LMLEYNLTDN HWFASLFEVR KFWIPAFFSD MFMGALIRTT SRSEGENSAF ECEGSLPEFK  360
TSLEIERHAG ATFTTTIFYE LRCISSQYIV SRWTKQPCEQ FNIVSRPTAE EHSDGVPSTK  420
SLTQQLWKEM HACIGLVRVG TSPKHIARMT DVLKEMKVDF SHEIDGEDHG KAKNKGSGKR  480
IKSKREIAIQ ARTKFKRTCH TCDKALGHDS RNCPLR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-14far-red elongated hypocotyls 3